Aguilar TM, Maldonado-Coelho M, Marini MA. Nesting biology of the Gray-hooded Flycatcher (Mionectes rufiventris). Ornitol Neotrop. 2000;11:223–30.
Google Scholar
Alves RRN, Lima JRF, Araújo HFP. The live bird trade in Brazil and its conservation implications: an overview. Bird Conserv Int. 2012;23:53–65.
Article
Google Scholar
Anciães M, Aguilar TM, Leite LO, Andrade RD, Marini MA. Nesting biology of the Yellow-olive Flatbill (Tyrannidae, Elaninae) in Atlantic Forest fragments in Brazil. Wilson J Ornithol. 2012;124:547–57.
Article
Google Scholar
Anjos L, Boçon R. Bird communities in natural forest patches in southern Brazil. Wilson Bull. 1999;111:397–414.
Google Scholar
Antunes AZ, Eston MR. Avifauna do Parque Estadual Alberto Löfgren-São Paulo: diagnóstico e propostas para a conservação. Rev Inst Flor. 2008;20:195–211.
Google Scholar
Antunes AZ, Silva BG, Matsukuma CK, Eston MR, Santos AMR. Aves do Parque Estadual Carlos Botelho – SP. Biota Neotrop. 2013;13:01–17.
Article
Google Scholar
Armacost JW Jr. The nest, eggs and nestlings of the Castelnau’s Antshrike (Thamnophilus cryptoleucus), with notes on its ecology and conservation. Wilson Bull. 2004;116:262–6.
Article
Google Scholar
Ayres ACM. O Ciclo da Caapora: A RMSP e o Parque da Cantareira. São Paulo: Annablume; 2008.
Google Scholar
Bates D, Mächler M, Bolker B, Walker S. Fitting linear mixed-effects models using lme4. J Stat Softw. 2015;67:1–48.
Article
Google Scholar
Beisiegel BM, Mantovani W. Habitat use, home range and foraging preferences of the coati Nasua nasua in a pluvial tropical Atlantic forest area. J Zool. 2006;269:77–87.
Article
Google Scholar
Bencke GA, Maurício GN, Develey PF, Goerck JM. Áreas importantes para a conservação das aves no Brasil: parte 1-estados do domínio da Mata Atlântica. São Paulo: SAVE Brasil; 2006.
Google Scholar
Beissinger SR. Ecological mechanisms of extinction. PNAS. 2000;97:11688–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
BirdLife International. Onychorhynchus swainsoni. The IUCN Red List of Threatened Species. 2019. https://doi.org/10.2305/IUCN.UK.2018-2.RLTS.T22699659A131326693.en(2018) (Accessed 1 Jan 2019).
Article
Google Scholar
Birskis-Barros I, Alencar LRV, Prado PI, Böhm M, Martins M. Ecological and conservation correlates of rarity in New World Pitvipers. Diversity. 2019;11:147.
Article
Google Scholar
Brocardo CR, Rodarte R, Bueno RS, Culot L, Galetti M. Mamíferos não voadores do Parque Estadual Carlos Botelho Continuum florestal do Paranapiacaba. Biota Neotrop. 2012;12:01–11.
Google Scholar
Chalfoun AD, Schmidt KA. Adaptive breeding-habitat selection: is it for the birds? Auk. 2012a;129:589–99.
Article
Google Scholar
Cheng L, Zhou L, Wu L, Feng G. Nest site selection and its implications for conservation of the endangered Oriental Stork Ciconia boyciana in Yellow River Delta. China Bird Conserv Int. 2019;30:323–34.
Article
Google Scholar
Cockle KL, Brodati AA, Lammertink M, Bonaparte EB, Ferreyra CFS, Di Sallo FG. Predators of bird nests in the Atlantic forest of Argentina and Paraguay. Wilson J Ornithol. 2016;128:120–31.
Article
Google Scholar
Cornell KL, Donovan TM. Effects of spatial habitat heterogeneity on habitat selection and annual fecundity for a migratory forest songbird. Landsc Ecol. 2010;25:109–22.
Article
Google Scholar
Chalfoun AD, Schmidt KA. Adaptive breeding-habitat selection: is it for the birds. Auk. 2012b;129:589–99.
Article
Google Scholar
Collias NE, Collias EC. Nest building and bird behaviour. Princeton: Princeton University Press; 1984.
Book
Google Scholar
Cuthbert R, Sommer E, Ryan P, Cooper J, Hilton G. Demography and conservation of the Tristan Albatross Diomedea [exulans] dabbenena. Biol Conserv. 2004;117:471–81.
Article
Google Scholar
Dário FR, De Vincenzo MCV, Almeida AF. Avifauna em fragmentos da Mata Atlântica. Cienc Rural. 2002;32:989–96.
Article
Google Scholar
Davanço PV, Oliveira LS, Souza LMS, Francisco MR. Breeding life-history traits of the Pale-breasted Thrush (Turdus leucomelas) in southeastern Brazil. Ornitol Neotrop. 2013;24:401–11.
Google Scholar
Delhey K, Carrizo M, Verniere LC, Mahler B, Peters A. Seazonal variation in reproductive output of a Neotropical temperate suboscine the Firewood-gatherer (Annumbius annumbi). Auk. 2010;127:222–31.
Article
Google Scholar
Del Hoyo J, Collar N, Kirwan GM. Atlantic Royal Flycatcher (Onychorhynchus swainsoni). In: del Hoyo J, Elliott A, Sargatal J, editors. Handbook of the Birds of the World. Barcelona: Lynx Edicions; 2019. https://www.hbw.com/node/1343672. Accessed 1 Dec 2019.
Descourtilz JT. História natural das aves do Brasil (ornitologia brasileira): notáveis por sua plumagem, canto e hábitos. Belo Horizonte: Itatiaia; 1983.
Google Scholar
Dinsmore SJ, White GC, Knopf FL. Advanced techniques for modeling avian nest survival. Ecology. 2002;83:3476–88.
Article
Google Scholar
Donatelli RJ, Ferreira CD, Dalbetoand AC, Posso SR. Análise comparativa da assembleia de aves em dois remanescentes florestais no interior do Estado de São Paulo. Brasil Rev Bras Zool. 2007;24:362–75.
Article
Google Scholar
Ferraz LPM, Varjabedian R. Evolução histórica da implantação e síntese das informações disponíveis sobre o Parque Estadual Carlos Botelho. São Paulo: Instituto Florestal; 1999.
Google Scholar
Fitzpatrick JW. Foraging behavior of Neotropical Tyrant Flycatchers. Condor. 1980;82:43–57.
Article
Google Scholar
Fondell TF, Ball IJ. Density and success of bird nests relative to grazing on western Montana grasslands. Biol Conserv. 2004;117:203–13.
Article
Google Scholar
Gilpin ME, Soulé ME. Minimum viable populations: processes of species extinction. In: Soulé ME, editor. Conservation Biology, the science of scarcity and diversity. Suderland: Sinauer Associates; 1986. p. 125–39.
Google Scholar
Gjerdrum C, Elphick CS, Rubega M. Nest site selection and nesting success in salt marsh breeding Sparrows: the importance of nest habitat, timing, and study site differences. Condor. 2005;107:849–62.
Article
Google Scholar
Goerck JM. Patterns of rarity in the birds of the Atlantic Forest of Brazil. Conserv Biol. 1997;11:112–8.
Article
Google Scholar
Greeney HF, Dingle C, Dobbs RC, Martin PR. Natural history of Streak-necked Flycatcher Mionectes striaticollis in north-east Ecuador. Cotinga. 2006;25:59–64.
Google Scholar
Groves CR, Jensen DB, Valutis LL, Redford KH, Shaffer ML, Scott JM, et al. Planning for biodiversity conservation: putting conservation science into practice. Bioscience. 2002;52:499–512.
Article
Google Scholar
Harnik PG, Simpson C, Payne JL. Long-term differences in extinction risk among the seven forms of rarity. Proc R Soc B. 2012;279:4969–76.
Article
PubMed
PubMed Central
Google Scholar
Harrell FEJr. Hmisc: Harrell Miscellaneous. R package version 4.2–0. 2019. https://CRAN.R-project.org/package=Hmisc. Accessed 1 Jan 2018.
Hasui E, Metzger JP, Pimentel RG, Silveira LF, Bovo AAB, Martensen AC, et al. Atlantic birds: a data set of bird species from the Brazilian Atlantic Forest. Ecology. 2018;99:497.
Article
PubMed
Google Scholar
Horton RE. Erosional development of streams and their drainage basins: hydrophysical approach to quantitative morphology. Geol Soc Am Bull. 1945;56:275–370.
Article
Google Scholar
Ibáñez-Álamo JD, Magrath RD, Oteyza JC, Chalfoun AD, Haff TM, Schmidt KA, et al. Nest predation research: recent findings and future perspectives. J Ornithol. 2015;156:S247–62.
Article
Google Scholar
Jamieson IG, Allendorf FW. How does the 50/500 rule apply to MVPs? Trends Ecol Evol. 2012;27:578–84.
Article
PubMed
Google Scholar
Jetz W, Sekercioglu CH, Böhning-Gaese K. The worldwide variation in avian clutch size across species and space. PLoS Biol. 2008;6:2650–7.
Article
CAS
PubMed
Google Scholar
Johnson EI, Stouffer PC, Vargas CF. Diversity, biomass, and trophic structure of a Central Amazonian Rainforest bird community. Rev Bras Ornitol. 2011;9:1–16.
Google Scholar
Kirwan GM. Notes on the breeding ecology and seasonality of some Brazilian birds. Rev Bras Ornitol. 2009;17:121–36.
Google Scholar
Laake JL. RMark: An R interface for analysis of capture-recapture data with MARK. R package version 2.2.6. 2013. https://cran.rproject.org/web/packages/RMark/index.html. Accessed 1 Jan 2018.
Lemmon PE. A new instrument for measuring forest overstorey density. J For Res. 1957;55:667–9.
Google Scholar
Lima RAF, Dittrich VAO, Souza VC, Salino A, Breier TB, Aguiar OT. Flora vascular do Parque Estadual Carlos Botelho, São Paulo. Brasil Biota Neotrop. 2011;11:173–214.
Article
Google Scholar
Linhares KV, Soares FA, Machado CS. Nest support plants of the Araripe Manakin Antilophia bokermanni, a critically endangered endemic bird from Ceará. Brazil Cotinga. 2010;32:121–5.
Google Scholar
Londoño GA. Parque Nacional del Manu, Cusco, Perú Anidación de Aves en un Gradiente Altitudinal. Chicago: Science and Education; 2014.
Google Scholar
Lopes LE, Marini MA. Biologia reprodutiva de Suiriri affinis e S. islerorum (Aves: Tyrannidae) no Cerrado do Brasil Central. Pap Avulsos Zool. 2005;45:127–41.
Article
Google Scholar
Lu X. Hot genome leaves natural histories cold. Adv Sci Lett. 2015;349:1064.
CAS
Google Scholar
Machado RB, Silveira LF, Silva MISG, Ubaid FK, Medolago CA, Francisco MR, et al. Reintroduction of songbirds from captivity: the case of the Great-billed Seed-finch (Sporophila maximiliani) in Brazil. Biodivers Conserv. 2020;29:1613–36.
Article
Google Scholar
Maia-Gouvêa ER, Gouvêa E, Piratelli A. Comunidade de aves de sub-bosque em uma área de entorno do Parque Nacional do Itatiaia, Rio de Janeiro. Brasil Rev Bras Zool. 2005;22:859–66.
Article
Google Scholar
Mallet-Rodrigues F, Guentert M, Kirwan G. Records of Atlantic Royal Flycatcher Onychorhynchus coronatus swainsoni from Santa Catarina, southern Brazil. Cotinga. 2006;26:06–8.
Google Scholar
Mallet-Rodrigues F, Parrini R, Pacheco JF. Birds of the Serra dos Órgãos, State of Rio de Janeiro, Southeastern Brazil: a review. Rev Bras Ornitol. 2007;15:05–35.
Google Scholar
Marques-Santos F, Braga TV, Wischhoff U, Roper JJ. Breeding biology of passerines in the subtropical Brazilian Atlantic Forest. Ornitol Neotrop. 2015;26:363–74.
Google Scholar
Martin TE. Nest predation and nest sites. Bioscience. 1993;43:523–32.
Article
Google Scholar
Martin TE, Geupel GR. Nest-monitoring plots: methods for locating nests and monitoring success. J Field Ornithol. 1993;64:507–19.
Google Scholar
Mattoso AQ, Pisciotta K, Barros MIA, Maia JLC, Lorejan SF. Parque Estadual Carlos Botelho, Plano de Manejo. São Miguel Arcanjo: Instituto Ekos Brasil; 2008.
Google Scholar
Mayfield H. Nesting success calculated from exposure. Wilson Bull. 1961;73:255–61.
Google Scholar
Mezquida ET. Nest site selection and nesting success of five species of passerines in a South American open Prosopis woodland. J Ornithol. 2004;145:16–22.
Article
Google Scholar
Myers N, Mittermeier RA, Mittermeier CG, Fonseca GAB, Kent J. Biodiversity hotspots for conservation priorities. Nature. 2000;403:853–8.
Article
CAS
PubMed
Google Scholar
Newmark WD, Stanley TR. Habitat fragmentation reduces nest survival in an Afrotropical bird community in a biodiversity hotspot. PNAS. 2011;108:11488–93.
Article
CAS
PubMed
PubMed Central
Google Scholar
Noske RA, Mulyani YA, Lloyd P. Nesting beside old nests, but not over water, increases current nest survival in a tropical mangrove-dwelling warbler. J Ornithol. 2013;154:517–23.
Article
Google Scholar
Ocampo D, Londoño GA. Tropical montane birds have increased nesting success on small river islands. Auk. 2015;132:01–10.
Article
Google Scholar
Oliveira LS, Sousa LMS, Davanço PV, Francisco MR. Breeding behavior of the Lined Seedeater (Sporophila lineola) in southeastern Brazil. Ornitol Neotrop. 2010;21:251–61.
Google Scholar
Oliveira-Filho AT, Fontes MAL. Patterns of floristic differentiation among Atlantic forests in southeastern Brazil and the influence of climate. Biotropica. 2000;32:793–810.
Article
Google Scholar
Oniki Y. Is nesting success of birds low in the tropics? Biotropica. 1979;11:60–9.
Article
Google Scholar
Owens IPF, Bennett PM. Ecological basis of extinction risk in birds: Habitat loss versus human persecution and introduced predators. PNAS. 2000;97:12144–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pacífico EC, Barbosa EA, Filadelfo T, Oliveira KG, Silveira LF, Tella JL. Breeding to non-breeding population ratio and breeding performance of the globally endangered Lear’s Macaw Anodorhynchus leari: conservation and monitoring implications. Bird Conserv Int. 2014;24:466–76.
Article
Google Scholar
Parker TA III, Stotz DF, Fitzpatrick JW. Ecological and distributional databases. In: Stotz DF, Fitzpatrick JW, Parker TA, Moskovits DK, editors. Neotropical birds: ecology and conservation. Chicago: University of Chicago Press; 1996. p. 113–436.
Google Scholar
Peck ME. Protective adaptation in the nesting habits of some Central American birds. Proc Iowa Acad Sci. 1908;15:177–82.
Google Scholar
Pense MR, Carvalho APC. Biodiversidade de aves do Parque Estadual do Jaraguá (SP). Conscientiae Saúde. 2005;4:55–61.
Article
Google Scholar
Perrella DF, Biagolini-Júnior CH, Ribeiro-Silva L, Zima PVQ, Galetti Junior PM, Francisco MR. Nest, eggs, and nestlings of the Atlantic Forest endemic Star-throated Antwren (Rhopias gularis). Wilson J Ornithol. 2015;127:322–6.
Article
Google Scholar
Perrella DF, Biagolini Junior CH, Ribeiro-Silva L, Zima PVQ, Francisco MR. Reproduction of the Atlantic Forest endemic Star-throated Antwren, Rhopias gularis (Aves: Thamnophilidae). Braz J Biol. 2017;77:356–60.
Article
CAS
PubMed
Google Scholar
Perrella DF, Ferrari DS, Katayama MV, Paiva RV, Guida FJV. A Avifauna do Parque Estadual das Fontes do Ipiranga, um remanescente de Mata Atlântica imerso na área urbana de São Paulo. SP Ornithologia. 2018;10:04–16.
Google Scholar
Perrella DF, Zima PVQ, Ribeiro-Silva L, Biagolini CH Jr, Carmignotto AP, Galetti PM Jr, et al. Bats as predators at nests of tropical forest birds. J Avian Biol. 2020;51:e02277.
Article
Google Scholar
Pinto O. Sobre a coleção Carlos Estevão de peles, ninhos e ovos das aves de Belém (Pará). Pap Avulsos Zool. 1953;11:111–222.
Google Scholar
Piratelli A, Andrade VA, Filho ML. Aves de fragmentos florestais em área de cultivo de cana-de-açúcar no sudeste do Brasil. Iheringia. 2005;95:217–22.
Article
Google Scholar
Primack RB. Essentials of conservation Biology. Sunderland: Sinauer Associates; 2006.
Google Scholar
R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing. 2017. https://www.R-project.org/. Accessed 30 Oct 2018.
Ribeiro MC, Metzger JP, Martensen AC, Ponzoni FJ, Hirota MM. The Brazilian Atlantic Forest: How much is left, and how is the remaining forest distributed? Implications for conservation. Biol Conserv. 2009;142:1141–53.
Article
Google Scholar
Ribeiro-Silva L, Perrella DF, Biagolini-Jr CH, Zima PVQ, Piratelli AJ, Schlindwein MN, et al. Testing camera traps as a potential tool for detecting nest predation of birds in a tropical rainforest environment. Zoologia. 2018;35:e14678.
Article
Google Scholar
Ribon R, Simon JE, Mattos GT. Bird extinctions in Atlantic Forest fragments of the Viçosa region. Southeastern Brazil Conserv Biol. 2003;17:1827–39.
Article
Google Scholar
Robinson SK. Coloniality in the Yellow-rumped Cacique as a defense against nest predators. Auk. 1985;102:506–19.
Article
Google Scholar
Robinson SK, Terborgh J. Bird community dynamics along primary successional gradients of an Amazonian whitewater river. Ornithol Monogr. 1997;48:641–72.
Article
Google Scholar
Robinson WD, Sherry TW. Mechanisms of avian population decline and species loss in tropical forest fragments. J Ornithol. 2012;153:S141–52.
Article
Google Scholar
Rodrigues VB, Jesus FM, Campo RI. Local habitat disturbance increases bird nest predation in the Brazilian Atlantic rainforest. Anim Biodiv Conserv. 2018;41:117–20.
Article
Google Scholar
Roldán-Clarà B, LaPergola JB, Chapa-Vargas L, Calmé S. Nest survival in the Neotropical Black Catbird (Melanoptila glabrirostris). J Ornithol. 2013;154:491–9.
Article
Google Scholar
Roper JJ. Try and try again: nest predation favors persistence in a Neotropical bird. Ornitol Neotrop. 2005;16:253–62.
Google Scholar
Schunck F, Melo MA, Sanches LA, Godoy FI, Martins GG, Mix P. Avifauna do Parque Ecológico do Guarapiranga e sua importância para a conservação das aves da Região Metropolitana de São Paulo. Ornithologia. 2016;9:35–57.
Google Scholar
Sick H. Ornitologia brasileira. Rio de Janeiro: Nova Fronteira; 1997.
Google Scholar
Skutch AF. Incubation and nesting periods of Central American birds. Auk. 1945;62:08–37.
Article
Google Scholar
Skutch AF. Life histories of Central American birds II: Families Vireonidae, Sylviidae, Turdidae, Troglodytidae, Paridae, Corvidae, Hirundinidae and Tyrannidae. Berkeley: Cooper Ornithological Society; 1960.
Google Scholar
Small MF, Hunter ML. Forest fragmentation and avian nest predation in forested landscapes. Oecologia. 1988;76:62–4.
Article
CAS
PubMed
Google Scholar
Tashian RE. Some birds from the palenque region of Northeastern Chiapas. México Auk. 1952;69:60–6.
Article
Google Scholar
Tellkamp MP, Martin TH. Noteworthy bird records from southern Yucatán state. México Cotinga. 2015;37:18–21.
Google Scholar
Terborgh J. Preservation of natural diversity: the problem of extinction prone species. Bioscience. 1974;24:715–22.
Article
Google Scholar
Tonetti VR, Rego MA, de Luca AC, Develey PF, Schunck F, Silveira LF. Historical knowledge, richness and relative representativeness of the avifauna of the largest native urban rainforest in the world. Zoologia. 2017;34:e13728.
Article
Google Scholar
Ubaid FK, Silveira LF, Medolago CB, Costa TVV, Francisco MR, Barbosa KVC, et al. Taxonomy, natural history, and conservation of the Great-billed Seed-Finch Sporophila maximiliani (Cabanis, 1851) (Thraupidae, Sporophilinae). Zootaxa. 2018;4442:551–71.
Article
PubMed
Google Scholar
Von Ihering H. Novas contribuições para a ornitologia do Brasil. Rev Mus Paul. 1914;9:411–88.
Google Scholar
Wetmore A. The birds of the Republic of Panamá, part 3, Passeriformes: Dendrocolaptidae (Woodcreepers) to Oxyruncidae (Sharpbills). Smithson Misc Collect. 1972;150:1–631.
Google Scholar
White GC, Burnham KP. Program MARK: Survival estimation from populations of marked animals. Bird Study. 1999;46:S120–39.
Article
Google Scholar
Whittingham MJ. Observations at a nest of the Pacific Royal Flycatcher Onychorhynchus coronatus occidentalis. Bull Br Ornithol Club. 1994;114:131–2.
Google Scholar
Willis EO. The composition of avian communities in remanescent woodlots in Southern Brazil. Pap Avulsos Zool. 1979;33:01–25.
Google Scholar
Winkler DW. Nests, eggs, and young: the breeding biology of birds. In: Podulka S, Rohrbaugh, RW, Bonney R, Handbook of bird biology. Ithaca: Cornell Lab of Ornithology; 2004. p. 8.1–8.152.
Xiao H, Hu Y, Lang Z, Fang B, Guo W, Zhang Q, et al. How much do we know about the breeding biology of bird species in the world? J Avian Biol. 2016;47:1–6.
Google Scholar
Zima PVQ, Perrella DF, Biagolini-Jr CH, Ribeiro-Silva L, Francisco MR. Breeding behavior of the Atlantic forest endemic Blue Manakin (Chiroxiphia caudata). Wilson J Ornithol. 2017;129:53–61.
Article
Google Scholar
Zoellick BW, Ulmschneider HM, Cade BS, Stanley AW. Isolation of Snake River islands and mammalian predation of waterfowl nests. J Wildlife Manage. 2004;68:650–62.
Article
Google Scholar
Zhu X, Srivastava DS, Smith JNM, Martin K. Habitat selection and reproductive success of Lewis’s Woodpecker (Melanerpes lewis) at its northern limit. PLoS ONE. 2012;7:e44346.
Article
CAS
PubMed
PubMed Central
Google Scholar