Variable | Explanation or notes | Default values |
---|---|---|
# of iterations | # of times the simulation is run | 500 |
# of years | # of years the population is modeled | 50 (2019‒2068) |
Extinction definition | How extinction is defined in the model | Only one sex remains |
# of populations | # of populations to be modeled | 1 |
Inbreeding depression | The level and effect of inbreeding depression | Yes |
Lethal equivalents | The severity of inbreeding depression | 0 |
EV concordance of reproduction and survival | The concordance between reproduction and survival in different populations | Not applicable—only 1 population modeled |
Dispersal rate | The rate of dispersal between populations | Not applicable—only 1 population modeled |
Reproductive system | The mating system | Monogamy (Zhai et al. 1994) |
Age at 1st reproduction in females | Age at which females begin breeding | 2 (Zhai et al. 1994) |
Age at 1st reproduction in males | Age at which males begin breeding | 2 (Zhai et al. 1994) |
Maximum age at reproduction | Age of females/males when breeding ceases | 15 (Yu et al. 2007) |
Maximum # of progeny produced/year | Maximum # of offspring produced by females each year | 5 (Zhai et al. 2001) |
Sex ratio at birth | Sex ratio of offspring at hatching | 1:1 |
Density dependence of reproduction | The relationship between reproduction and population density | Yes |
P(0) | % adult females breeding at low density | 35.70% (Additional file 1: Table S1) |
P(K) | % adult females breeding at carrying capacity | 50.00% (estimates) |
A | Allee parameter | 0 (Chen 2018) |
B | Steepness parameter | 2 (Ralls et al. 1988) |
Proportion of adult females breeding | The percentage of adult females that breed each year | (35.7 − ((35.7 − 50) × ((N/K)2))) × (N/(0 + N)) |
EV in % breeding | EV in % of adult females breeding each year | 10% set as default |
Distribution of # of offspring/female | Statistical distribution characterizing the # of offspring produced | Specify exact distribution |
1. Offspring 2. Offspring 3. Offspring 4. Offspring 5. Offspring | Percentages of females with certain numbers of offspring | 1.25% 10.00% 32.50% 53.75% 2.50% (Additional file 1: Table S2) |
Female mortality | Mortality rates of females, specified for three age classes (0–1, 1–2, and 2+) by the mean and SD | For baseline: 0–1, 45.1%; 1–2, 15.1%; 2+, 5.9% (Wang 2015); SD set at 10% of the mean as default |
Male mortality | Mortality rates of males, specified for three age classes (0–1, 1–2, and 2+) by the mean and SD | Identical to female mortality |
Number of catastrophes | Each type of catastrophe is implemented separately and occurs independently | 2 |
Catastrophe frequency | Frequency of catastrophes affecting the population | Catastrophe 1: 14% Catastrophe 2: 15% |
Catastrophe severity | Reduction in survivorship/reproduction as a result of the catastrophe | Catastrophe 1: reduction in survivorship/reproduction: 0.1/0.1 Catastrophe 2: reduction in survivorship/reproduction: 0.1/0.1 |
Mate monopolization | % of adult males breeding/year | 28.11% (Additional file 1: Table S1) |
Initial population size | The number of individuals at the beginning of the simulation | 150 (population size in 2018) |
Age distribution of initial population | Distribution of individuals by age at the beginning of the simulation | Stable age distribution |
Carrying capacity | The carrying capacity of the environment | 420 (estimates) |
Harvest | Whether individuals were removed from the population | No harvest |
Supplementation | Whether individuals were added to the population | No supplementation |