Genomic insights into hybridization in a localized region of sympatry between pewee sister species (Contopus sordidulus × C. virens) and their chromosomal patterns of differentiation

Manthey, Joseph D.; Robbins, Mark B.

doi:10.1186/s40657-016-0040-7

Avian Research

Table 1 Specimen data

From: Genomic insights into hybridization in a localized region of sympatry between pewee sister species (Contopus sordidulus × C. virens) and their chromosomal patterns of differentiation

KU #	ID	Loc.	Lat.	Long.	# Reads	RAD Cov.	Macaulay #
123169	sordidulus	1	42.766	−103.927	1,079,094	64.4 (42.6)
123170	sordidulus	1	42.766	−103.927	806,037	49.0 (34.6)
123171	sordidulus	1	42.766	−103.927	1,548,056	94.0 (62.7)
123168	sordidulus	1	42.766	−103.927	2,089,666	118.4 (77.0)
123161	sordidulus	2	42.607	−101.164	294,705	18.0 (11.2)
123162	sordidulus	2	42.607	−101.164	1,420,181	75.1 (47.8)	515875
123163	sordidulus	2	42.607	−101.164	590,477	32.6 (21.8)
123164	sordidulus	2	42.607	−101.164	3,176,097	180.3 (116.1)
123165	sordidulus	2	42.607	−101.164	279,508	19.3 (12.4)	515877
123166	sordidulus	2	42.607	−101.164	577,213	37.1 (25.4)	515879
123167	sordidulus	3	42.785	−100.93	719,346	46.8 (32.0)	515893
123176	BX sordidulus	4	42.794	−100.635	2,540,709	125.6 (82.7)	515908
123177	sordidulus	4	42.794	−100.635	731,836	40.0 (25.9)
123179	sordidulus	4	42.795	−100.633	1,525,266	79.1 (52.7)	515909
123178	sordidulus	4	42.795	−100.626	2,677,440	163.1 (109.6)
123175	virens	5	42.901	−100.476	608,266	34.2 (21.5)
123174	F2	5	42.901	−100.476	459,940	27.4 (17.5)	515903
123172	virens	5	42.901	−100.476	1,008,597	64.1 (45.1)	515906, 201685
123173	sordidulus	5	42.901	−100.476	610,039	30.2 (20.0)
123160	sordidulus	6	41.829	−100.311	756,038	48.0 (32.1)	515864
123180	virens	7	42.826	−100.142	681,124	28.6 (18.6)	515921
123183	virens	8	42.669	−99.768	1,126,351	58.8 (38.9)
123181	virens	8	42.666	−99.776	853,277	42.9 (27.7)
123182	virens	8	42.668	−99.772	4,309,626	241.7 (162.2)
123186	virens	9	42.378	−98.113	3,253,913	189.1 (126.5)
123185	virens	9	42.378	−98.113	1,173,340	60.4 (41.1)
123184	virens	9	42.379	−98.118	1,293,998	67.0 (44.3)
123187	virens	10	39.951	−94.99	989,725	61.2 (41.3)
123188	virens	10	39.951	−94.99	2,564,719	149.6 (103.6)
123189	virens	10	39.951	−94.99	1,069,467	60.7 (39.2)
123190	virens	10	39.951	−94.99	1,633,129	90.6 (61.0)

List of voucher specimens used in this study (KU # from University of Kansas Natural History Museum), identification of individual based on genetic results (ID; BX = backcross), localities from Fig. 1a (Loc.), coordinates of collecting locales (Lat., Long.), number of RAD-seq sequencing reads (# Reads), sequencing coverage of the loci used in this study for each individual (RAD Cov.; mean and SD; based on the 50 % coverage matrix list of loci), and accession information about individuals with song recordings (Macaulay #)

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ISSN: 2053-7166

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